PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018845

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 346aa MW: 40440.1 Da PI: 4.4675

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687424	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-42140	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.2	3.6e-12	119	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekk......rtsessstcpyfdqle 86 +W+++ + +L+e+ ++ +l+r++l++ +W ev++k++e ++e++ +qC++++e l+k+ykk+k+ +++ ++++ + ++ +f++++ Lsa018845 119 EWSENATFVLLEVWGDRYLQLGRKSLRGDDWVEVAEKVSEMcKMEINETQCRNRLETLKKKYKKEKAKMEDmgmggrGSEGYHGKWGFFKRMD 211 5***********************************775378********************976541111113455556677777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.3E-20	118	212	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDYNPSVRPR RPVRNNNNYH GNSTYNEYEN DEFEEENEGL NQRYGYQEDD EEEEEDDDEY 60 QHGYYRVSGG GIDAGESSRR HQKKRRLDNL VSNYEFAPRT NANPSKEAYG GVPDRSGDEW 120 SENATFVLLE VWGDRYLQLG RKSLRGDDWV EVAEKVSEMC KMEINETQCR NRLETLKKKY 180 KKEKAKMEDM GMGGRGSEGY HGKWGFFKRM DMLLSPKKQH NGLPCGVDSG EYVFMNTKVY 240 LNQSNALDEM RDSPGESESD EDDSDDRKDD DGFRLLAESV QNFGEIYEKI EGRKRQQMMD 300 LEKMRMDFQR ELELQKKQIL ERAQEEIAKI REGDDEDVNS VENLSG

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDYNPSVRPR RPVRNNNNYH GNSTYNEYEN DEFEEENEGL NQRYGYQEDD EEEEEDDDEY  60
QHGYYRVSGG GIDAGESSRR HQKKRRLDNL VSNYEFAPRT NANPSKEAYG GVPDRSGDEW  120
SENATFVLLE VWGDRYLQLG RKSLRGDDWV EVAEKVSEMC KMEINETQCR NRLETLKKKY  180
KKEKAKMEDM GMGGRGSEGY HGKWGFFKRM DMLLSPKKQH NGLPCGVDSG EYVFMNTKVY  240
LNQSNALDEM RDSPGESESD EDDSDDRKDD DGFRLLAESV QNFGEIYEKI EGRKRQQMMD  300
LEKMRMDFQR ELELQKKQIL ERAQEEIAKI REGDDEDVNS VENLSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735924.1	0.0	trihelix transcription factor ASIL2
TrEMBL	A0A2J6KAT8	0.0	A0A2J6KAT8_LACSA; Uncharacterized protein
STRING	VIT_11s0016g04130.t01	5e-98	(Vitis vinifera)