PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018903

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 529aa MW: 58178.2 Da PI: 7.6212

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-35840	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.8	1e-16	120	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ + L++a+ e+ +l+rg+l+ +Weev++++ r + ++s +qCk+k +nl+kryk ++++ ++ +++s++p+++++e Lsa018903 120 EWSDTAIAFLLDAYLEKFMQLNRGNLRVRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRVMNNnGGNTTSHWPWYQKME 208 5***********************************666677899*************9988654442367788******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-19	118	210	No hit	No description
CDD	cd04254	2.73E-102	266	523	No hit	No description
Pfam	PF00696	5.6E-15	267	502	IPR001048	Aspartate/glutamate/uridylate kinase
Gene3D	G3DSA:3.40.1160.10	5.8E-52	319	522	IPR001048	Aspartate/glutamate/uridylate kinase
SuperFamily	SSF53633	3.27E-41	319	522	IPR001048	Aspartate/glutamate/uridylate kinase

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
XSHQTNQRFH HHLSTTAHLL ASKAPPFNAL PPPGATHDGV LQASGEGYSD HAFGSQPMVV 60 VTYENESDPN RSGISAARNE KRSDCEDLSD GGTPYSYNKK SKVAGSSSGN GGEYRKDREE 120 WSDTAIAFLL DAYLEKFMQL NRGNLRVRDW EEVAAVVSER CENQSKSVEQ CKNKVDNLKK 180 RYKLERHRVM NNNGGNTTSH WPWYQKMEQI VGNSLPLKPA LDEDKSVGGI NSSARQSKRY 240 TTATSSPNNH QITNMEPKSV TNPRWRRVVF KISGSAFTGT DSQNIDPKEI KGKILSFHNI 300 QTSVGFFVFG FLYSIGSNAI AREVSIACHI GIEVAIVVGG RNFFCGDTWV TSNGLDRTTA 360 YQIGMMTTVM NSILLQSTLE KLGVVTRVQS SFCMPEVSEP YNKQRAIRHL EKGRVVIFGG 420 IGAGTGNPLF STDTAAALRA SEIHADVVIK GSSLHGIYDC AIGESEYEHI SFREFASRGV 480 ALMDMMAVTF CQENGIPVVM FNLDEVGNIS RALCGEHIGM LIDLNGRVG

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

XSHQTNQRFH HHLSTTAHLL ASKAPPFNAL PPPGATHDGV LQASGEGYSD HAFGSQPMVV  60
VTYENESDPN RSGISAARNE KRSDCEDLSD GGTPYSYNKK SKVAGSSSGN GGEYRKDREE  120
WSDTAIAFLL DAYLEKFMQL NRGNLRVRDW EEVAAVVSER CENQSKSVEQ CKNKVDNLKK  180
RYKLERHRVM NNNGGNTTSH WPWYQKMEQI VGNSLPLKPA LDEDKSVGGI NSSARQSKRY  240
TTATSSPNNH QITNMEPKSV TNPRWRRVVF KISGSAFTGT DSQNIDPKEI KGKILSFHNI  300
QTSVGFFVFG FLYSIGSNAI AREVSIACHI GIEVAIVVGG RNFFCGDTWV TSNGLDRTTA  360
YQIGMMTTVM NSILLQSTLE KLGVVTRVQS SFCMPEVSEP YNKQRAIRHL EKGRVVIFGG  420
IGAGTGNPLF STDTAAALRA SEIHADVVIK GSSLHGIYDC AIGESEYEHI SFREFASRGV  480
ALMDMMAVTF CQENGIPVVM FNLDEVGNIS RALCGEHIGM LIDLNGRVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3nwy_A	8e-52	320	522	77	279	Uridylate kinase
3nwy_B	8e-52	320	522	77	279	Uridylate kinase
3nwy_C	8e-52	320	522	77	279	Uridylate kinase
3nwy_D	8e-52	320	522	77	279	Uridylate kinase
3nwy_E	8e-52	320	522	77	279	Uridylate kinase
3nwy_F	8e-52	320	522	77	279	Uridylate kinase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745955.1	0.0	uncharacterized protein LOC111894112 isoform X1
TrEMBL	A0A2J6JP35	0.0	A0A2J6JP35_LACSA; Uncharacterized protein
STRING	VIT_08s0007g04160.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein