PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018948
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 414aa    MW: 45697.6 Da    PI: 8.2376
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-17713PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-116085227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C+++ rtG C++G++C+F+H+p
  Lsa018948 60 GEPDCSYYIRTGLCRFGATCRFNHPP 85
               6899********************97 PP
2zf-CCCH406.5e-13104130127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tGtCk+G++CkF+H++
  Lsa018948 104 PGQPECQYYLKTGTCKFGATCKFHHPR 130
                5789*********************96 PP
3zf-CCCH37.25e-12152176327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +++rtG+Ck+G++CkF+H++
  Lsa018948 152 EAECAYYLRTGQCKFGNTCKFHHPQ 176
                689********************97 PP
4zf-CCCH33.57.3e-11281307127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+f+ +tG Ck+G+ C+F+H++
  Lsa018948 281 PGQPDCQFYIKTGDCKFGAVCRFHHPR 307
                5789*********************96 PP
5zf-CCCH38.91.4e-12328353227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++lC f++r+G+Ck+G++CkF H++
  Lsa018948 328 GEPLCIFYSRYGICKFGPSCKFDHPM 353
                689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2395886IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-55885IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-86085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-56386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-46484IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126103131IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6107132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5109131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159149177IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5149176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6151177IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10152176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352280308IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4280307IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6282307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5285309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4286308IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511326354IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10328353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5329353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTSFSGGGME FDSGIPMSRP PVTAEVSSSL SPPLNEDALW QLNLRSRESM ESGPYPVREG  60
EPDCSYYIRT GLCRFGATCR FNHPPNRKLA IATAKMRGEY PERPGQPECQ YYLKTGTCKF  120
GATCKFHHPR EKAGIAGQVS LNVLGYPLRP NEAECAYYLR TGQCKFGNTC KFHHPQPSNM  180
MVAFSGSPVY PAVQSPTSPG QQWSLTRASF VPSPRWQPPS NYAQMILPQG VGSVPGWNAY  240
RGSMGSLSSI DSQHQHQHQA ATGGNQGYYA LERENVFPER PGQPDCQFYI KTGDCKFGAV  300
CRFHHPRERV IPMPDCVLSP IGLPLRRGEP LCIFYSRYGI CKFGPSCKFD HPMGVFTYNL  360
SPNSSDRQHN MLASASGGSG VLNITSQGNM EGVSVTLSER IQMPSNDNSI DHQE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023729881.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2J6MJF70.0A0A2J6MJF7_LACSA; Uncharacterized protein
STRINGXP_008218439.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-174zinc finger protein 1