PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa019015

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 449aa MW: 49545.8 Da PI: 8.7197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-30330	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.4	1.7e-15	276	321	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++++L++l+P++ K +Ka++L +++eY+k+Lq Lsa019015 276 HNQSERKRRDKINQRMNTLQKLVPNS-----SKTDKASMLDEVIEYVKQLQ 321 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.46E-16	267	325	No hit	No description
PROSITE profile	PS50888	17.422	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-18	274	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-13	276	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-18	276	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-18	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MNQCVPSWDL EDINRNQNVF KLDYEVAELT WENGQLAMHE LGHRRVPSKS HSTTSTLPKY 60 TWDKPRAAET LEAIVDQAKL QPYSKYQVAV NDEEVVPWLQ HRIPTIATGS ANASGTMTSD 120 ALVPSSNGNN RTDEQSAQVH RSIKSAHDTG CSTRVGSCSG AQSAFFDRRM GQGGGSTTVA 180 AHEWSSCRDQ SASIGSETFA ATDTYDGDLG GSRLTSTTGS PQNTSSGKDY SRSTSPDDSL 240 FLCRPHQPEA NGGREKRKVK AKPSISNKRR RTAAIHNQSE RKRRDKINQR MNTLQKLVPN 300 SSKTDKASML DEVIEYVKQL QAHVHMMSKM NMSSMMMPLA MQQQQMQMAM MNSMGMGMGM 360 GMGVGGMMDM NTICSNFPVG FHPSTFMHMP SWNHHPTDQV TNTAPMAAAN PMSAFLACRS 420 QPITMDAYGR MTALYQHMQN QTCGPLPKN

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MNQCVPSWDL EDINRNQNVF KLDYEVAELT WENGQLAMHE LGHRRVPSKS HSTTSTLPKY  60
TWDKPRAAET LEAIVDQAKL QPYSKYQVAV NDEEVVPWLQ HRIPTIATGS ANASGTMTSD  120
ALVPSSNGNN RTDEQSAQVH RSIKSAHDTG CSTRVGSCSG AQSAFFDRRM GQGGGSTTVA  180
AHEWSSCRDQ SASIGSETFA ATDTYDGDLG GSRLTSTTGS PQNTSSGKDY SRSTSPDDSL  240
FLCRPHQPEA NGGREKRKVK AKPSISNKRR RTAAIHNQSE RKRRDKINQR MNTLQKLVPN  300
SSKTDKASML DEVIEYVKQL QAHVHMMSKM NMSSMMMPLA MQQQQMQMAM MNSMGMGMGM  360
GMGVGGMMDM NTICSNFPVG FHPSTFMHMP SWNHHPTDQV TNTAPMAAAN PMSAFLACRS  420
QPITMDAYGR MTALYQHMQN QTCGPLPKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	270	KRKVKAKPSISNKRRR
2	268	283	RRRTAAIHNQSERKRR
3	279	284	ERKRRD
4	280	285	RKRRDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755662.1	0.0	transcription factor UNE10-like
TrEMBL	A0A2J6LWA4	0.0	A0A2J6LWA4_LACSA; Uncharacterized protein
STRING	XP_002511647.1	1e-116	(Ricinus communis)