PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019025
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 527aa    MW: 58865.1 Da    PI: 5.2862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689030PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14352398455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Lsa019025 352 NHVLAERRRREKLNERFMVLRSLVPLV-----TKMDKASILGDTIEYVKQLR 398
                7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-26183IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.22E-18347409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.879348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-15352402No hitNo description
Gene3DG3DSA:4.10.280.105.1E-19352409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-12352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.87E-5450520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
VCVSFSFPPG VGLVGEAYAK QQHLWLTGAN EVDSTVFTRA ILAKSADIQT VVCIPLLNGV  60
VELGTTEKVE EGIDLIEHVK HFFKVENDKS IIPRPRPALS AHSSNTNTLS TRQFKPLNNR  120
YLMDAYADDD NEDEEDDDDD DEEEEENESD FEAETDHISI VEEPHDEDSI VMEANELLQL  180
DMSTDIRFGS SIDDSINLDS HFDHLLPTSQ DHDSCRADSH PHALELHNPS TIHLQGSREL  240
AGQSLLPYSF NHSPQTNKST ESMARLTLSI TPQLTIHVHP IILHRLGIKS PSSPVAETRS  300
NSQSLLKYII FTVPFLHSNN NNNNNKSTEG DASESVASRI RKTTSHEELS ANHVLAERRR  360
REKLNERFMV LRSLVPLVTK MDKASILGDT IEYVKQLRKK IQDLEARDHR QDTLDTSKRK  420
IQVVDTGSIG GGRKAARSVQ VEVSIIESDA LVELQCPHRE GLLLDVMKKL RELGVEITTV  480
QSCMNEGTCT AEMRAKVKVN GNNGKKISIM QVKKAINKII SPLLLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14352401857Transcription factor MYC2
5gnj_B1e-14352401857Transcription factor MYC2
5gnj_E1e-14352401857Transcription factor MYC2
5gnj_F1e-14352401857Transcription factor MYC2
5gnj_G1e-14352401857Transcription factor MYC2
5gnj_I1e-14352401857Transcription factor MYC2
5gnj_M1e-14352401857Transcription factor MYC2
5gnj_N1e-14352401857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERRRRE
2357362RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744759.10.0basic helix-loop-helix protein A
SwissprotE3SXU41e-131BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2R4KP590.0A0A2R4KP59_LACSA; BHLH transcriptional factor
STRINGEOX947961e-129(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-43bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]