PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019065
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 273aa    MW: 31300.4 Da    PI: 4.78
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674610PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-173380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l+d+++++G ++W++ ++  g+ R++k+c++rw +yl
        Lsa019065 33 KGPWTHQEDRILIDYINLHGHPNWRALPKLAGLLRCGKSCRLRWTNYL 80
                     79******************************99************97 PP
2Myb_DNA-binding52.88.8e-1786131148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w++yl
        Lsa019065  86 RGNFSREEEETIIQLHTALGNR-WSAIAARLP-GRTDNEIKNVWHTYL 131
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-242483IPR009057Homeodomain-like
PROSITE profilePS5129416.2082880IPR017930Myb domain
SuperFamilySSF466897.75E-2929127IPR009057Homeodomain-like
SMARTSM007171.7E-133282IPR001005SANT/Myb domain
PfamPF002496.3E-153380IPR001005SANT/Myb domain
CDDcd001672.45E-103580No hitNo description
PROSITE profilePS5129425.07381135IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2684135IPR009057Homeodomain-like
SMARTSM007175.4E-1485133IPR001005SANT/Myb domain
PfamPF002498.6E-1586131IPR001005SANT/Myb domain
CDDcd001677.52E-1088131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
XVSQGVRNSI NRYQLDLTTM VRAPCCEKMG LKKGPWTHQE DRILIDYINL HGHPNWRALP  60
KLAGLLRCGK SCRLRWTNYL RPDIKRGNFS REEEETIIQL HTALGNRWSA IAARLPGRTD  120
NEIKNVWHTY LKKRLNPNTN PTVTSSKFQQ EVEISKEDEE DIARSSPLET NSSNQTSYNQ  180
IDSPQPSSTE ISSVTTSTND NSCMEDLVLD QSLPDMDEEF WSEIFSADNS DEFPAVHENI  240
GQLQSGCGFE SNLHDDMDFW YNVFTRGEEL PQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26311365109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733503.10.0transcription factor MYB14-like
SwissprotQ9SJX82e-79MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2J6KGI30.0A0A2J6KGI3_LACSA; Uncharacterized protein
STRINGPOPTR_0002s03960.17e-95(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-80myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]