PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019076
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 306aa    MW: 34785.8 Da    PI: 9.4521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684426PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-19593PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.8e-1492143155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Lsa019076  92 QRMTHIAVERNRRKQMNHHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 143
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.47E-1390147No hitNo description
SuperFamilySSF474591.57E-1690161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.99691142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1192143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1392159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1097148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGLETLSSNN ELLNLIIYNT ATPFSFHETT TFHNHHPPPM EIITYNFPSP TAAQPHSSME  60
NDQKSAVEGV GRKKKRRKKG RVSKNKEEAE TQRMTHIAVE RNRRKQMNHH LSVLRSLMPE  120
SYVQRGDQAS IVGGAIEFVK ELEHLLQSLE AQKFRLTQQG DAIIHDQNSN FATNPTQGRD  180
IPQLPLHFYK LFSYPQNSSQ YPNKYTSKHK ATIADIEVNL IHSHANLRIV LQKRLTPLSK  240
MVVFLQKSRL SVLHLNITTL DPLVLYSISL KVEEGCWLNS ADQIAGAVHQ ILALIEEEAI  300
LCIDTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178RKKKRRKK
27276KKKRR
37277KKKRRK
47278KKKRRKK
57377KKRRK
67378KKRRKK
792103RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769542.10.0transcription factor bHLH71-like
SwissprotQ9C7T42e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2J6L1A90.0A0A2J6L1A9_LACSA; Uncharacterized protein
STRINGXP_009763212.13e-98(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]