PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa019096

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 443aa MW: 48185.1 Da PI: 9.826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685905	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-2757	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	204	225	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg+ F ++ L++H + H Lsa019096 204 CHKCGEQFVKWEALENHHLSkH 225 *****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	204	225	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.44E-20	227	434	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.0E-11	233	413	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MPAVWFALRK SLHCQSGPAD VHDPNFQGKN LSKIVTKTKK SSTSTGGKSG CSRSLANLKD 60 VIHGSKRHME EKPTTMATTT TNASPRSIGS SELLNPIAHE VVLSNSNCEL KITGFGSLQD 120 GNGVGGDGEG VSSRFEGTLK PGTPGPHHYH HHHKLTSSPM TNRRNSNGFS RASRGLGSGF 180 GAINASKARA SFEGEGHGIF NLACHKCGEQ FVKWEALENH HLSKHAVTEL IEGDSSRKIV 240 ELIYKTSWSK CHTNSGGIER ILKVHNMQKT LSEFEEHRET VKVKASKLQK KHPRCLADGN 300 ELLRFHGTLV ECNLGLNGSS SLCQSNNCKV CQILRHGFII KKNGNNKNIV GGVFTTSTSQ 360 RAFEAIDVNN GSCLRKALIV CRVIAGRVHK PLENIQELAN QSGFDSLAGK VGIYSNIEEL 420 YLLNPRALLP CFXNNLQATN VTX

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MPAVWFALRK SLHCQSGPAD VHDPNFQGKN LSKIVTKTKK SSTSTGGKSG CSRSLANLKD  60
VIHGSKRHME EKPTTMATTT TNASPRSIGS SELLNPIAHE VVLSNSNCEL KITGFGSLQD  120
GNGVGGDGEG VSSRFEGTLK PGTPGPHHYH HHHKLTSSPM TNRRNSNGFS RASRGLGSGF  180
GAINASKARA SFEGEGHGIF NLACHKCGEQ FVKWEALENH HLSKHAVTEL IEGDSSRKIV  240
ELIYKTSWSK CHTNSGGIER ILKVHNMQKT LSEFEEHRET VKVKASKLQK KHPRCLADGN  300
ELLRFHGTLV ECNLGLNGSS SLCQSNNCKV CQILRHGFII KKNGNNKNIV GGVFTTSTSQ  360
RAFEAIDVNN GSCLRKALIV CRVIAGRVHK PLENIQELAN QSGFDSLAGK VGIYSNIEEL  420
YLLNPRALLP CFXNNLQATN VTX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023748856.1	0.0	uncharacterized protein LOC111897123
TrEMBL	A0A2J6JHN0	0.0	A0A2J6JHN0_LACSA; Uncharacterized protein
STRING	XP_009588899.1	0.0	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400055929	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-138	C2H2 family protein