PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019143
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HSF
Protein Properties Length: 361aa    MW: 41610.2 Da    PI: 4.8008
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-22193PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35111022102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+ye+++d+ +++++sws+n +sf+v+++ ef+ ++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
     Lsa019143  11 FIAKTYEMVDDPLTDTIVSWSHNDRSFIVWNPPEFSGELLPRYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIRGQPHLLKNIH 98 
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rkk 
     Lsa019143  99 RKKP 102
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.57E-366100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-607100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-387100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.5E-3211100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNDAQSSLPP FIAKTYEMVD DPLTDTIVSW SHNDRSFIVW NPPEFSGELL PRYFKHNNFS  60
SFIRQLNTYG FRKIDPEQWE FANEDFIRGQ PHLLKNIHRK KPVHSHSMQN LYIHGASSSS  120
IASPLTESER IRYNEEIYRL HYEKQSLLLE FQTQQQEQNE IESTARGLTE RIKAAGKNQK  180
DLLCTLDQIL QKPFNTCDFA PQVPDNNDRK RRLSAEPHND QSCPCNIPIS ETLTTNTLLA  240
LDLELVEQLD SSLMFCEKLL TEVQETLDRK KWLPESDQEP ASSELNTVAG SEEEEGSGKR  300
GIEHVSVNDG FWEQFLTENP GGSTTENDRR GLDQYGKFWW NMRSVNSLAD QMGHLAQAER  360
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-24610015120Heat shock factor protein 1
5d5u_B8e-24610024129Heat shock factor protein 1
5d5v_B8e-24610024129Heat shock factor protein 1
5d5v_D8e-24610024129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212DRKRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732857.10.0heat stress transcription factor A-4a-like
RefseqXP_023732858.10.0heat stress transcription factor A-4a-like
TrEMBLA0A2J6KHC20.0A0A2J6KHC2_LACSA; Uncharacterized protein
STRINGXP_009590974.11e-110(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-81heat shock transcription factor A4A