PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019235
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 330aa    MW: 37268.8 Da    PI: 7.3284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683896PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
        Lsa019235 13 RGLWSPEEDEKLIKHITSHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
        Lsa019235  66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-26462IPR009057Homeodomain-like
PROSITE profilePS5129418.686860IPR017930Myb domain
SuperFamilySSF466897.11E-2910107IPR009057Homeodomain-like
SMARTSM007174.2E-131262IPR001005SANT/Myb domain
PfamPF002492.2E-151360IPR001005SANT/Myb domain
CDDcd001671.13E-111660No hitNo description
PROSITE profilePS5129425.97761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2563116IPR009057Homeodomain-like
SMARTSM007171.5E-1565113IPR001005SANT/Myb domain
PfamPF002492.5E-1566109IPR001005SANT/Myb domain
CDDcd001677.27E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIKHITS HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLSA HQIPINLNAN NSKHSDPTKP LFSIINNTSS QTKDSKRFIN PVMSQNLYEN  180
TLTHQSSNLN YQDYNNNVSH DQSTMGFSSQ QLVESTKTPI LSPLPSSLNP LDFGNMGQPW  240
CGNSNLGVSF ENTRRQEEFQ EMLQQEMVSQ GGVTQGLDLR NSGEVQNQTN IDMTSFDGCN  300
IDLEFMEAAL IPCGMYSNGG SLDHLAWDCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31131157108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768938.10.0transcription repressor MYB6-like
TrEMBLA0A1W6R5H30.0A0A1W6R5H3_CICIN; R2R3 MYB transciption factor 17
STRINGXP_009783085.11e-104(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-84myb domain protein 67