PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019277
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family YABBY
Protein Properties Length: 191aa    MW: 21266.6 Da    PI: 10.1961
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677812PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.31.1e-59261725170
      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104
                ss++q+Cyv+C+ C+t+lavsvPstslfk+vtvrCGhCt+ll v+++      +a+++             +v +  +++n   +++++t  +       
  Lsa019277  26 SSADQLCYVHCTRCDTVLAVSVPSTSLFKTVTVRCGHCTNLLPVTMRGLLLPPPAVNQ------------FRVGHFPMNQNIYPNDTSTTA-P------G 106
                578****************************************888887777777775............455544444444443333332.2......2 PP

      YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                +  ++p++p ++rPPekrqr+Psaynrfikeeiqrika nPdishreafsaaaknWahfP+ihfgl
  Lsa019277 107 RIFDLPKPPVINRPPEKRQRIPSAYNRFIKEEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGL 172
                3468999999******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-6127172IPR006780YABBY protein
CDDcd013907.18E-6112162No hitNo description
SuperFamilySSF470952.88E-8115165IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-5121166IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSISSSSTTT ITTLSPPPVL EHIPPSSADQ LCYVHCTRCD TVLAVSVPST SLFKTVTVRC  60
GHCTNLLPVT MRGLLLPPPA VNQFRVGHFP MNQNIYPNDT STTAPGRIFD LPKPPVINRP  120
PEKRQRIPSA YNRFIKEEIQ RIKARNPDIS HREAFSAAAK NWAHFPHIHF GLMGDQTTAV  180
NKSSMRQQIL M
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024993668.17e-90axial regulator YABBY 5-like
SwissprotQ9XFB14e-60YAB3_ARATH; Axial regulator YABBY 3
TrEMBLA0A2J6LAD91e-137A0A2J6LAD9_LACSA; Uncharacterized protein
STRINGVIT_02s0154g00070.t018e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.13e-62YABBY family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yadav RK, et al.
    Plant stem cell maintenance involves direct transcriptional repression of differentiation program.
    Mol. Syst. Biol., 2013. 9: p. 654
    [PMID:23549482]