PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019310
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 312aa    MW: 35379.7 Da    PI: 5.2749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687911PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-54173PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.3e-29116176259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+ed +v+eitY+g+H++ 
  Lsa019310 116 SDGYSWRKYGQKDILGANHPRAYYRCTHRhvqGCLATKQVQRSDEDSSVFEITYRGRHTCM 176
                7***************************99999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28105177IPR003657WRKY domain
SuperFamilySSF1182901.83E-25113175IPR003657WRKY domain
SMARTSM007741.2E-40115177IPR003657WRKY domain
PROSITE profilePS5081122.114115173IPR003657WRKY domain
PfamPF031061.2E-26117175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
METSKKRPLI NELTQGKELT NQLKDYLDKP MSAEACEFLV EKILSSYEKA LSMLNRGIVF  60
DESQTPLSFG EISPTTDVSD LADSDSKNVF KKRKTMAKWS EQVKVCSGTM VEGPLSDGYS  120
WRKYGQKDIL GANHPRAYYR CTHRHVQGCL ATKQVQRSDE DSSVFEITYR GRHTCMQATQ  180
LSKALEKTPK QEQENIHVEK PTQKTHMERG FSFKSSKGMN TCEDGLFPSF KFDSTPIETE  240
KLENLFYLGC DSTAFIAFNH NLHNSDSDVS EMMNSTPNSG SNSPMMDMGF SLDYVDFDGD  300
ILFDITDLEK FV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20115175868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757904.10.0probable WRKY transcription factor 46
TrEMBLA0A2J6LRF40.0A0A2J6LRF4_LACSA; Uncharacterized protein
STRINGXP_010095789.16e-85(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-47WRKY DNA-binding protein 46