PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019461
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 314aa    MW: 34688.9 Da    PI: 8.9657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679742PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.7e-171564255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h++ E+rRR++iN++f+ Lrel+P+     ++K +Ka+ L +++eYI+ Lq
  Lsa019461 15 RSKHSATEQRRRSKINDRFSMLRELIPHG----DQKRDKASFLLEVIEYIQFLQ 64
               889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.3E-241080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-191183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.9711363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-151564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.96E-161567No hitNo description
SMARTSM003534.4E-131969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
KVDAAHNDQK PNTPRSKHSA TEQRRRSKIN DRFSMLRELI PHGDQKRDKA SFLLEVIEYI  60
QFLQEKVNKF EDSCRGWNNE PPTIMPWNHN QRVTEGFVDQ PQVQNGASGP ALLYAPKVNE  120
NKCIDLPKKG QNIFDSDMSS LETMKEIGQH PQLTNKGSPF PSPLQPNIYS PGCGSTSATA  180
PIPAMVADTV NTSSHLQHSR SCTSDCTLAT DKLKDQELTI ESGTISISTI YSQGLLSTLT  240
QALQSSGVDL SHANISVQID LGKRATVTTH DSSTPVLKKH GVPTINETVG RSRLASTREE  300
KSDKGLKRFK TSRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767110.10.0transcription factor BIM1 isoform X1
TrEMBLA0A2J6L6N80.0A0A2J6L6N8_LACSA; Uncharacterized protein
STRINGXP_002514597.11e-107(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.31e-45bHLH family protein