PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019486
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 219aa    MW: 24600.5 Da    PI: 8.4472
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672858PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.8e-33141198259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+v+r ++d+ vv++tYeg+H h+
  Lsa019486 141 DDGYRWRKYGQKAVKNSKFPRSYYRCTYQECNVKKQVQRLSKDEGVVVTTYEGTHSHP 198
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32125198IPR003657WRKY domain
SuperFamilySSF1182904.05E-29132199IPR003657WRKY domain
PROSITE profilePS5081128.793135200IPR003657WRKY domain
SMARTSM007743.3E-37140199IPR003657WRKY domain
PfamPF031061.8E-26141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
QQIISLSLSL SLSLSPMLNF VEVFPYNFSS STSLTAASSN LSLNLMKDNS KTTYSDYNNS  60
HNQLEDDTEL DLIGKNPKCS SHEVVVDHVP PTTSSGIGNS EGNDFNSVSG SKLINTIKKG  120
EKKIKKAKCA FQTRSQVDII DDGYRWRKYG QKAVKNSKFP RSYYRCTYQE CNVKKQVQRL  180
SKDEGVVVTT YEGTHSHPIE KSTDNFEHIL TQMQIYSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-26130197774Probable WRKY transcription factor 4
2lex_A8e-26130197774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763405.11e-151probable WRKY transcription factor 75
TrEMBLA0A2J6LEN91e-150A0A2J6LEN9_LACSA; Uncharacterized protein
STRINGXP_008222197.12e-65(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-55WRKY DNA-binding protein 75