PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019613
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 223aa    MW: 24323.1 Da    PI: 6.8014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-16779PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192574255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrdp   g ++r++lg+f+tae Aa+a++ a+ +++g
  Lsa019613 25 HYRGVRKRP-WGRYAAEIRDP---GTKTRVWLGTFDTAEAAARAYDTAAINFRG 74
               6********.**********8...325***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-132574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-322582IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-222584IPR016177DNA-binding domain
SMARTSM003802.6E-392588IPR001471AP2/ERF domain
PROSITE profilePS5103224.1972582IPR001471AP2/ERF domain
CDDcd000184.04E-232584No hitNo description
PRINTSPR003673.2E-112637IPR001471AP2/ERF domain
PRINTSPR003673.2E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVMKNETAKP VTAAGKVAAA ANEVHYRGVR KRPWGRYAAE IRDPGTKTRV WLGTFDTAEA  60
AARAYDTAAI NFRGSKAKIN FPPSLDGVTG GNYSQSSTVE STHSSRESEN NTPVELDLMR  120
CLVGEASSGG GYQFFVNGNQ QTVAFVPHAQ PIMFFGVQPE MAMNRAHQYP IHQMEQHFDG  180
GYGGRAESVS ESSSVADYIP RDTSYSKREI NLDLNLAPPT VEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-222582563ATERF1
3gcc_A7e-222582563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758260.11e-168ethylene-responsive transcription factor 4-like
TrEMBLA0A2J6LQN91e-166A0A2J6LQN9_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-28erf domain protein 9