PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa019637

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GeBP

Protein Properties

Length: 401aa MW: 44453.4 Da PI: 4.6459

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-6001	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112.7	2.3e-35	178	272	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 +r+ws++Dei+lLqG+id+++ +g sp +d+d+fy+f +s+ +++ksql eKirrLKkKf+ +++k +++g++p+f k+h++k fe+skkiWg Lsa019637 178 KRVWSDDDEILLLQGFIDYQSIKGCSPLSDMDGFYQFTMDSLPGNATKSQLYEKIRRLKKKFRVNSEKaSSNGEDPVFPKPHERKLFEVSKKIWG 272 8**************************************************************9997899********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.4E-31	178	272	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MATKRSIPLD DPPAASSDDE ETEDEQEQHV ITHKANAESL SSEEEEEEES DEETIGAVKN 60 PYGKPTIQNP NSKTGESSSE EESESDSEEE TPTPLKTSIV KRQTLPTKSS STLDSNSELR 120 TPTASDFAII PSKKINALPA PEKIPISKRP SSESDVKDKK KVKLSNGDAD DEKKSVNKRV 180 WSDDDEILLL QGFIDYQSIK GCSPLSDMDG FYQFTMDSLP GNATKSQLYE KIRRLKKKFR 240 VNSEKASSNG EDPVFPKPHE RKLFEVSKKI WGINGCESVS ASAAAGGSNP KPKTKPVKVI 300 PKIEVKEEDE DDKTTIAKVE DFETLYPYWN VALNSECSSS FRFPTGVVAL IKENLSLIGE 360 AKAKEMNEKW EAVFENEAVL RRRRIALLSS VNDVETTSLG K

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MATKRSIPLD DPPAASSDDE ETEDEQEQHV ITHKANAESL SSEEEEEEES DEETIGAVKN  60
PYGKPTIQNP NSKTGESSSE EESESDSEEE TPTPLKTSIV KRQTLPTKSS STLDSNSELR  120
TPTASDFAII PSKKINALPA PEKIPISKRP SSESDVKDKK KVKLSNGDAD DEKKSVNKRV  180
WSDDDEILLL QGFIDYQSIK GCSPLSDMDG FYQFTMDSLP GNATKSQLYE KIRRLKKKFR  240
VNSEKASSNG EDPVFPKPHE RKLFEVSKKI WGINGCESVS ASAAAGGSNP KPKTKPVKVI  300
PKIEVKEEDE DDKTTIAKVE DFETLYPYWN VALNSECSSS FRFPTGVVAL IKENLSLIGE  360
AKAKEMNEKW EAVFENEAVL RRRRIALLSS VNDVETTSLG K

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023753735.1	0.0	STOREKEEPER protein-like
TrEMBL	A0A2J6M0P8	0.0	A0A2J6M0P8_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	7e-24	DNA-binding storekeeper protein-related transcriptional regulator