PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10000208

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 204aa MW: 22660.1 Da PI: 9.1412

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10000208	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00045	3	59	22	55
HHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 L++l+P+a ++ +Ka++L ++++Y+++L+ Lus10000208 3 ALQKLVPNANkvlgitykvvfflkqpfqgltqcFTSVDQTDKASMLDEVIDYLRQLR 59 5788888866688888888888888888888877777889***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.858	1	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-7	1	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-7	4	9	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-7	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MKALQKLVPN ANKVLGITYK VVFFLKQPFQ GLTQCFTSVD QTDKASMLDE VIDYLRQLRA 60 QVEMMNNIRS MKPPQPSQMM MMVPNIDQMP LFGLGMGMNP LASSSSSIHM RHLLPPSAFM 120 TNTTPPFLLH HSTANMNYNN TCKSSGEANL SSLNAAQSSM DVELYLKNMA AMDQQQQQEV 180 HNRSTNAIGA ASHHSSHTIQ RDK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10000208

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10000208	1e-149	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12999	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	7e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10000208