PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000400
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 79aa    MW: 9106.72 Da    PI: 10.4679
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000400genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.47.9e-083301239
                 HHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
       SRF-TF 12 tfskRrngilKKAeELSvLCdaevavii 39
                 ++ kR+  ++KK +ELS+L ++++  i+
  Lus10000400  3 SLKKRKSRLMKKVKELSTLKAIQAYTIV 30
                 789********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003193.0E-6233IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-7346IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASLKKRKSR LMKKVKELST LKAIQAYTIV NNRYDEAQPS ETWTPMLDGV HYVLDGVHYV  60
LPRIKNMPKM DQNKNMVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8862997e-44HQ886299.1 Linum usitatissimum clone GMU2AYZ01BMX4G microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100004002e-51(Linum usitatissimum)