PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10000470

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 294aa MW: 32667 Da PI: 7.3822

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10000470	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll ++++ +G g W++ +++ g++R++k+c++rw++yl Lus10000470 14 RGAWTAEEDHLLTRYIESHGVGKWRSLPKKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Lus10000470 67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.8	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.88E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.59E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.466	62	116	IPR017930	Myb domain
SMART	SM00717	1.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-24	69	115	IPR009057	Homeodomain-like
CDD	cd00167	7.88E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGRSPCCSKQ GMNRGAWTAE EDHLLTRYIE SHGVGKWRSL PKKAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKRVLLEN 120 CFPISASSSS IRPTKPHSRK LMIFTSSNAQ LAATKKYSFI DQQVIKTKAL KCSSNQLLEY 180 QQQNLAEGKR INNIDTVLET SSSNELSCVD GTSSNSHTNN AVHEGSDELI MTMDFGGGAE 240 ISLSELLLGC EDLCDFNMIS SGKGTEPELL ISSEEMLDEG TWNNIDVIDQ KAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10000470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022754800.1	4e-77	transcription factor TT2-like
Swissprot	P81393	6e-62	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1Q3BXY6	1e-76	A0A1Q3BXY6_CEPFO; Myb_DNA-binding domain-containing protein
STRING	Lus10000470	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	1e-62	myb domain protein 7

Link Out ? help Back to Top
Phytozome	Lus10000470

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]