PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000492
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 375aa    MW: 42235.5 Da    PI: 5.3829
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000492genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.22.7e-33431332101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e+++d  +++++sws+ g+sfvv+d+++f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF++++F +g+k ll++i+
   Lus10000492  43 FLTKTFEMVDDLFTNHVVSWSRGGTSFVVWDPHSFSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEEFLRGHKYLLKNIR 130
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Lus10000492 131 RRK 133
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.12E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2943132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNNFFTVKEE YPGDTPAMTT AMMTVVPPPQ PMEGLHDAGP PPFLTKTFEM VDDLFTNHVV  60
SWSRGGTSFV VWDPHSFSTN LLPRFFKHNN FSSFVRQLNT YGFRKIDPER WEFANEEFLR  120
GHKYLLKNIR RRKAPLPPPP SLSPSPSPSQ SFYATIPNQA PGTSAVELGQ FGLDGELGRL  180
KRDKQVLTME LVKLRQQQQS TKAYVTELEQ RLQGTESKQQ QMMRFLARAV QNPAFLHQLA  240
QRKEKRKELE EALSKKRRRP IDRGRGKNLV GESSNWRQVI KPEPVKYGIG SPFGLTELEA  300
LALEMQGMGK GVRLEEADGE EEDGEELEAT SDGELDDGFW EELLNESSGG GGEEQEDVNT  360
LAEQLGYLSS SSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-223813221129Heat shock factor protein 1
5d5v_B2e-223813221129Heat shock factor protein 1
5d5v_D2e-223813221129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244258KRKELEEALSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759739.11e-156heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U8NS091e-153A0A1U8NS09_GOSHI; heat stress transcription factor A-7a-like
STRINGLus100004920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.19e-98heat shock transcription factor A6B