PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10000532

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 201aa MW: 23344.2 Da PI: 5.4324

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10000532	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	119.2	5.1e-37	1	196	172	374
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysa 266 +++++++n l ++l++l+++ ++ +++E+l+V+ +++lh+l ++ ++er+e+L++++sl+Pk v+++e+++d++ + ++ +f++ +ey + Lus10000532 1 MNINLQINRLDNRSLQNLNTQVINKDREETLVVCAQFRLHHLN---HNNPDERSEFLRVLRSLEPKGVILSENNMDCSCNgcvDYSSGFTRRVEYLWR 95 79*****9999*************************8...55566667****************8883333459********** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 ++ds+++ + + r + Er++++ e+ ++++++g++ +e++e+W er++ +GF+ + e+a ++a++llrk++ ++++rvee++g + l Wk Lus10000532 96 FLDSTSSAF----KGRESEERRMMEGEAAKALTNSGEM----NERKEQWCERMRGVGFSGEGFCEDAIDEARALLRKHDnNWEMRVEEKDGFVGLWWK 185 *7775....66666667777777999**99....88888****************************9999*********** PP GRAS 364 drpLvsvSaWr 374 ++p+ ++S W+ Lus10000532 186 GQPVSFCSLWK 196 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.585	1	175	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-34	1	196	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNINLQINRL DNRSLQNLNT QVINKDREET LVVCAQFRLH HLNHNNPDER SEFLRVLRSL 60 EPKGVILSEN NMDCSCNGCV DYSSGFTRRV EYLWRFLDST SSAFKGRESE ERRMMEGEAA 120 KALTNSGEMN ERKEQWCERM RGVGFSGEGF CEDAIDEARA LLRKHDNNWE MRVEEKDGFV 180 GLWWKGQPVS FCSLWKLQAE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269\|PubMed:15961669, ECO:0000269\|PubMed:23077241}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10000532

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021294785.1	1e-116	nodulation-signaling pathway 1 protein
Swissprot	Q4VYC8	1e-105	NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBL	A0A061GJK7	1e-114	A0A061GJK7_THECC; Nodulation-signaling pathway 1 protein, putative
STRING	Lus10000532	1e-146	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6874	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	3e-66	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10000532

Publications ? help Back to Top
Cerri MR, et al. Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection. Plant Physiol., 2012. 160(4): p. 2155-72 [PMID:23077241] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]