PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000719
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 901aa    MW: 97858.6 Da    PI: 6.1039
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000719genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1873131357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lus10000719  73 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 131
                  5679*****************************************************97 PP
2bZIP_119.71.8e-061251701863
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l  e+
  Lus10000719 125 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVVEN 170
                  9****************************************98776 PP
3START1593.5e-502134212205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++ g a+ra+g+v  +++   +e+l+d++ W ++ ++ e+      g  g+++l +++
  Lus10000719 213 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPT-KIAEILKDRPSWFRDSRSLEVFTLFPAGngGTIELVYSQ 309
                  789*******************************************************.7777777777*******9888888887777********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry++ l+ g++v++++S++     p+   s+++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Lus10000719 310 TYAPTTLAPaRDFWTLRYTKNLENGSLVVCERSLSGSGAGPSqaaSAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 407
                  ***********************************8888888799***************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++k++ a+l++ ++
  Lus10000719 408 AQKITIAALRYVRQ 421
                  *********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.33768132IPR001356Homeobox domain
SMARTSM003895.0E-1570136IPR001356Homeobox domain
SuperFamilySSF466893.85E-1672135IPR009057Homeodomain-like
CDDcd000865.32E-1673133No hitNo description
PfamPF000467.5E-1674131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-1875131IPR009057Homeodomain-like
CDDcd146861.93E-6125164No hitNo description
PROSITE profilePS5084827.397203431IPR002913START domain
CDDcd088752.43E-70207423No hitNo description
Gene3DG3DSA:3.30.530.203.8E-19212395IPR023393START-like domain
SuperFamilySSF559611.51E-32212424No hitNo description
SMARTSM002341.1E-41212422IPR002913START domain
PfamPF018521.3E-47213421IPR002913START domain
PfamPF086703.5E-44752899IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MAMTRPGAGS GTDGSGGRKV FLERAVFSER RELKGKPKGE EEERARGGPP GRETSSGGGG  60
GGSITKHLAD NGKYVRYTAE QVEALERVYA ECPKPSSLRR QQLIRECPIL CNIEPKQIKV  120
WFQNRRCREK QRKEASRLQT VNRKLTAMNK LLMEENDRLQ KQVSQLVVEN GYMRQQLQTL  180
NASGGTDGSC DSVVTTPQHS LRDANNPAGL LSIAEETLTE FLSKATGTAV DWVQMPGMKP  240
GPDSVGIFAI SQSCGGVAAR ACGLVSLEPT KIAEILKDRP SWFRDSRSLE VFTLFPAGNG  300
GTIELVYSQT YAPTTLAPAR DFWTLRYTKN LENGSLVVCE RSLSGSGAGP SQAASAQFVR  360
AEMLPSGYLI RPCDGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVVAQK ITIAALRYVR  420
QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAVNGFS DDGWSMMTTC DGAEDVIISV  480
NSTKNLTSTS NNTAGNNSFP FLGGILCAKA SMLLQNVPPA VLVRFLREHR SEWADFNVDA  540
YSAASLKPGS YAYPGSRPTR FTGSQIIMPL GHTIENEEML EVIRLEGHSL VQEDAFVSRD  600
IHLLQICSGI DENAVGACSE LVFAPIDEMF PDDAPLLPSG FRVIPLDSKA KDTQDALNTN  660
RTLDLTSSLE VGTATNPSAP DSTSGQNSRS VLTIAFQFPF ESNLQENVAT MARQYVRSVI  720
SSVQRVAMAI SPSGLSPSVG RNLSPGSPEA LTLAQWINQS YRQVYYIGAE LLSSDDSSTG  780
DSLLKSLWHH PDAILCCSLK SLPVFIFANQ AGLDMLETTL VALQDITLDK IFDESGRKAL  840
YADFAKLTDQ GFAYLAGGIC MSTMGRHVSF DQAVSWKVHA AGDENTVHCL AFSFVNWSFV  900
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000719
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529946.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLB9SVC70.0B9SVC7_RICCO; DNA binding protein, putative
STRINGLus100007190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]