PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000746
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 130aa    MW: 14712.8 Da    PI: 6.2298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000746genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-18151001099
                  HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +l+ g++++p +f+e+h   +    +k  tl+  sg++Wev+l +++++g+++l++GW +F+k + L++gD++vF l+++  f  +v+vf+ 
  Lus10000746  15 MLQDGIIYIPTEFVERHreRL---VGKFATLKVASGETWEVEL-VNGGDGKIWLANGWGKFAKHQSLNQGDVLVFGLEQDCYF--HVMVFDP 100
                  5667899**********6433...356899*************.7999999**************************999999..9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-223101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-223101IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-19599No hitNo description
PROSITE profilePS5086313.4656101IPR003340B3 DNA binding domain
SMARTSM010192.2E-137101IPR003340B3 DNA binding domain
PfamPF023621.2E-141599IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNNKPHFFRV MLHFMLQDGI IYIPTEFVER HRERLVGKFA TLKVASGETW EVELVNGGDG  60
KIWLANGWGK FAKHQSLNQG DVLVFGLEQD CYFHVMVFDP NTVSERIKCS SHDQVEVEEG  120
FVVGKVTGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100007461e-91(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-11B3 family protein