PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000748
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 234aa    MW: 26450.4 Da    PI: 8.0791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000748genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.7e-1319921490
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                 + l +p +f+++h+++   + +l l  ++g+   v +  r+++g++++t GW +Fv++n+L++ D+v F+++g ++ 
  Lus10000748 19 KELKIPDPFMDQHSQI--LPDKLALILRNGNPVVVSV-ERRSKGQCFFTLGWTHFVEENNLEDDDIVFFYFHGVRTV 92
                 4599*********877..6678999999999999999.4677777*************************8775444 PP
2B333.76.4e-111442171286
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  +++++++p  f ++ g+k  +    +led++g++W++ +     k ++  l+ GW+eF ++n++++gD + F l++
  Lus10000748 144 SRRQMRIPAVFSDSAGLKVGG--NAVLEDPNGKVWSIVVGAtGVKCRQNQLSIGWSEFIRENEVEDGDKLSFFLKS 217
                  45679*******999998655..6***************66455555689********************998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-16399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-14398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.536100IPR003340B3 DNA binding domain
CDDcd100173.69E-8798No hitNo description
SMARTSM010195.8E-4998IPR003340B3 DNA binding domain
PfamPF023621.8E-101993IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-15129225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.856133228IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-14134219IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-9136228IPR003340B3 DNA binding domain
CDDcd100171.39E-8136215No hitNo description
PfamPF023622.7E-9144216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEKDEQPSFV KIFHGGLAKE LKIPDPFMDQ HSQILPDKLA LILRNGNPVV VSVERRSKGQ  60
CFFTLGWTHF VEENNLEDDD IVFFYFHGVR TVKIVVYDLL GCLKGVKLTY QGSAEPINVG  120
TRRYNRADSK EREKWFEVII KPHSRRQMRI PAVFSDSAGL KVGGNAVLED PNGKVWSIVV  180
GATGVKCRQN QLSIGWSEFI RENEVEDGDK LSFFLKSNLI QVKIQKEGVV VID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100007481e-171(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-09B3 family protein