PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000750
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 253aa    MW: 28166.3 Da    PI: 8.3166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000750genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.8e-15231021596
                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   + +p +f+++hg++   s +l+l+++ g    v +     +++++++++ GW++Fv++ng++e D++vF+++g++ +  +v v
  Lus10000750  23 KVKIPDSFMAQHGEN--LSGKLVLMSTYGDPVVVSVERssVGGRQWFFFKHGWSNFVEENGVEEHDSLVFHFTGDRAA--NVVV 102
                  578*********966..7889********77777773333777788*************************9998777..4444 PP
2B344.33.3e-141442121685
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                   ++p +f ++ +++  ++ +++led+sg++W+v +i  ++++++  l++GW +Fv an+L+ gD + F ++
  Lus10000750 144 KYIPMEFHDATELS--QGDKVQLEDPSGEVWSVSVIAgDRRGRQLRLAGGWPDFVAANRLEIGDGLEFCFK 212
                  58999999888888..5669***************998999999********************9988754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-184108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-196108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1949106IPR003340B3 DNA binding domain
CDDcd100171.46E-81095No hitNo description
SMARTSM010192.1E-912106IPR003340B3 DNA binding domain
PfamPF023621.5E-1223102IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83129225IPR003340B3 DNA binding domain
SMARTSM010190.0031133225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-15135225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-14142224IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-12143212IPR003340B3 DNA binding domain
CDDcd100172.16E-11145223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKKQQQPQTP SFLKLYTGEC DEKVKIPDSF MAQHGENLSG KLVLMSTYGD PVVVSVERSS  60
VGGRQWFFFK HGWSNFVEEN GVEEHDSLVF HFTGDRAANV VVYDSSGCVK GLTVKKQQAG  120
SLTKKSFGMG MMMKKQSMPL FQEKYIPMEF HDATELSQGD KVQLEDPSGE VWSVSVIAGD  180
RRGRQLRLAG GWPDFVAANR LEIGDGLEFC FKAEGLIQVK IDRKKKKKKV IASDVKKEEE  240
QGMVCIGRGL TD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227DRKKKKK
2222228RKKKKKK
3224236KKKKKVIASDVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100007500.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-08B3 family protein