PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000782
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LSD
Protein Properties Length: 135aa    MW: 14444.6 Da    PI: 8.3306
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000782genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.13.3e-14832125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggCrtlL+Y+rG ++VRC++C+tV
  Lus10000782  8 CGGCRTLLMYTRGTTNVRCSCCHTV 32
                 ************************9 PP
2zf-LSD1512.3e-164670125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 Cg+Crt+L+YP+GApsV+Ca+C++V
  Lus10000782 46 CGNCRTTLMYPYGAPSVKCAVCHFV 70
                 ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-16534IPR005735Zinc finger, LSD1-type
PfamPF069434.3E-12832IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.104.1E-4876No hitNo description
TIGRFAMsTIGR010533.7E-134373IPR005735Zinc finger, LSD1-type
PfamPF069438.8E-154670IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDMSQFICGG CRTLLMYTRG TTNVRCSCCH TVNLAPVSNQ VAHINCGNCR TTLMYPYGAP  60
SVKCAVCHFV TNVTISNVRV QQRPNDQGAM VPSTSPAMPQ SQTQTVVVEN PMSVDESGKL  120
VSNVVVGVTT TDRK*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000782
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075549.12e-71protein LSD1 isoform X1
SwissprotQ2QMB31e-52LOL2_ORYSJ; Protein LOL2
TrEMBLA0A067KSR64e-70A0A067KSR6_JATCU; Uncharacterized protein
STRINGLus100007821e-93(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-52LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]