PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001133
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 405aa    MW: 44832.9 Da    PI: 8.1215
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001133genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.9e-36331252103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
   Lus10001133  33 FLTKTYQLVDDPSTDHIVSWGEDHSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDFFKKGEKHLLCEIH 120
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Lus10001133 121 RRKTA 125
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3824117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-5929122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3430122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-203356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MALIVENSAS SSCGVDGGML LSLESQKSVP APFLTKTYQL VDDPSTDHIV SWGEDHSTFI  60
VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANDFFKK GEKHLLCEIH  120
RRKTAQLPPP PPPHHHHHHH PAGGFFPFST NRLSISPSDD ADDHYFQHNH NNWSPPSGTL  180
SGLMGPTSMM SNGGGVYYTT GDGSSSGNTN SAAGTVTALS QDNERLRRSN NMLMTELSHM  240
KKLYNDIIYF VQNHVKPVPP PTPNKAPPLN QLLLGGGYNN NNNNNMSTMM MMKKGQSGAP  300
QVQVLGTNTT TTITSPSYSS NKSSNNSHST VTIIEEIEGC NNNNTKLFGV AINNNHHHNQ  360
SSKKRLHPDH DYAINHQTSS SSKSHRLVLE KDDLGLNLMP PSPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-222912426131Heat shock factor protein 1
5d5v_B9e-222912426131Heat shock factor protein 1
5d5v_D9e-222912426131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356466.11e-127heat stress transcription factor B-4
SwissprotQ9C6351e-105HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A371FL021e-126A0A371FL02_MUCPR; Heat stress transcription factor B-4
STRINGLus100011330.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-91heat shock transcription factor B4