PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001139

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 159aa MW: 17110.9 Da PI: 9.8708

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001139	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	72.1	1.1e-22	20	73	1	54
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer 54 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll + ++ ++ Lus10001139 20 PCAACKFLRRKCLPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLIQGKQRQQ 73 7*********************************************98665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.01	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-22	20	74	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MAGNSSSSSS TTSNNYTNSP CAACKFLRRK CLPDCIFAPY FPPEEPHKFA NVHKIFGASN 60 VSKLLIQGKQ RQQAAQRGPP ASEGGRSQLA GLRGRGEAQG PGLRLRWSYL SPRETEASRM 120 NPIYDHHQQG YYGNYSSWNN NNCGGDHGQG RGSGGGGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	19	75	10	68	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	19	75	10	68	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001139

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ884127	1e-74	HQ884127.1 Linum usitatissimum clone Contig1437 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003554815.1	2e-33	LOB domain-containing protein 25
Refseq	XP_006603773.1	2e-33	LOB domain-containing protein 25
Refseq	XP_006603775.1	2e-33	LOB domain-containing protein 25
Refseq	XP_014626970.1	2e-33	LOB domain-containing protein 25
Refseq	XP_014626971.1	2e-33	LOB domain-containing protein 25
Refseq	XP_028217535.1	2e-33	LOB domain-containing protein 25-like
Refseq	XP_028217536.1	2e-33	LOB domain-containing protein 25-like
Refseq	XP_028217537.1	2e-33	LOB domain-containing protein 25-like
Refseq	XP_028217538.1	2e-33	LOB domain-containing protein 25-like
TrEMBL	A0A0B2QV33	4e-32	A0A0B2QV33_GLYSO; LOB domain-containing protein 25
TrEMBL	K7MVP6	4e-32	K7MVP6_SOYBN; Uncharacterized protein
STRING	Lus10001139	1e-114	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-27	LBD family protein

Link Out ? help Back to Top
Phytozome	Lus10001139