PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001271
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 322aa    MW: 35316.8 Da    PI: 9.1119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-1390141155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Lus10001271  90 QRMTHIAVERNRRKLMNEHLALLRSLMPPS---YVQRGDQASIVAGAIEFVKELE 141
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.43E-1188145No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1288145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1588164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.53889140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1090141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-995146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLSAAAASSS NELANFIVIY DTISATPCTS DTYYYPDNLA PAAPAVLPPP PPPPSPPAKV  60
ARGGGNDVGR SKKRRRKARV CKNKEEAETQ RMTHIAVERN RRKLMNEHLA LLRSLMPPSY  120
VQRGDQASIV AGAIEFVKEL EHSLHSLQAK KLHHPSPPTP LFSQFFNHTS SITTQDTTNN  180
SKSTNSFNNT KTILTTSSSS PSSSSSNDED DGIVGIEVTL IETHANLRFL TRKRSTNRRP  240
WQLSKLVGGF HALRLSVLHF SLTTVHPFSL YSISAKVEEG CQLTSVDDIA AAVHHMLRLI  300
IEQDEEDHHH GSSSLLHPHI T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176KKRRRK
290101RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736694.16e-87PREDICTED: transcription factor bHLH71-like
RefseqXP_018808815.16e-87PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR03e-58BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A1U8NFU21e-85A0A1U8NFU2_GOSHI; transcription factor bHLH71-like
TrEMBLA0A2I4DNU51e-85A0A2I4DNU5_JUGRE; transcription factor bHLH71-like
STRINGLus100012710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.16e-58beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]