PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001298
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 131aa    MW: 14347.8 Da    PI: 10.0224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-203887255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +grWvAeI+d +    ++ r++lg+f+taeeAa+a+++a+  l+g
  Lus10001298 38 RFVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEEAARAYDEAACLLRG 87
                 789******.7*********55....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.62E-303794No hitNo description
SuperFamilySSF541712.55E-203896IPR016177DNA-binding domain
PROSITE profilePS5103219.5853895IPR001471AP2/ERF domain
SMARTSM003801.2E-3738101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-283894IPR001471AP2/ERF domain
PfamPF008472.8E-143887IPR001471AP2/ERF domain
PRINTSPR003671.0E-83950IPR001471AP2/ERF domain
PRINTSPR003671.0E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MGRKRKVAAA VAATDQTSSG SENDLQVNDI DRRTRNKRFV GVRQRPSGRW VAEIKDTVQK  60
IRVWLGTFDT AEEAARAYDE AACLLRGSNT RTNFWPSSNP SSSSSSHHQY GHPASTAAFC  120
SNYTFCNFGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-15381031480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237RTRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483176.11e-40PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A0D2RVI02e-39A0A0D2RVI0_GOSRA; Uncharacterized protein
TrEMBLA0A392MIL71e-39A0A392MIL7_9FABA; Ethylene-responsive transcription factor (Fragment)
STRINGLus100012986e-93(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-24related to AP2 11