PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001513
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 292aa    MW: 33743.1 Da    PI: 7.6328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001513genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001152176123
                  EEETTTTEEESSHHHHHHHHHH..T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                  + C  C+k ++  +++++H+++  H
  Lus10001513 152 FYCDLCKKQYKLAMEFEVHLSSydH 176
                  78*****************987566 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.1E-1655100IPR000467G-patch domain
PROSITE profilePS5017416.7557102IPR000467G-patch domain
PfamPF015852.1E-155898IPR000467G-patch domain
PROSITE patternPS000280154176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRILLQKEWE IYVILLWQES VIEDLGQEFC LPKTHRPTEN VDLENVEQAS LETRLTSTNV  60
GFRLLQKMGW KGKGLGKDEQ GIVEPIKSGI RDAKLGLGKQ EEDDYFTAEE NIQRRKLDIE  120
VEETKEHAKK REVLAEREQK IQTEVQEIRK VFYCDLCKKQ YKLAMEFEVH LSSYDHNHRK  180
RFKEMREMHG SSSRDDRQKR ELQRQEREMA RFAQMADAHR QQQQLELQQE ESGSAVKTVT  240
SSLGDQDQRK TLKFGFSSKS GGSKKATPTA SAAKRPKVLL ASVLKDDSDE G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001513
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621264.11e-155G patch domain-containing protein 8-like isoform X1
RefseqXP_021621265.11e-155G patch domain-containing protein 8-like isoform X1
TrEMBLA0A2C9VHJ21e-153A0A2C9VHJ2_MANES; Uncharacterized protein
STRINGLus100015130.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428