PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001520

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C3H

Protein Properties

Length: 167aa MW: 17740.9 Da PI: 8.2084

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001520	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.2	5e-12	57	79	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f +tG+C+yGd+Ck++H Lus10001520 57 TGLCNRFVKTGFCPYGDSCKYSH 79 679******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.73E-12	4	46	No hit	No description
Pfam	PF06220	6.7E-7	5	39	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	15.366	54	82	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-4	56	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-7	56	81	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-9	57	79	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-8	57	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MPLGKYHCDY CDKEFQDTPV ARKRHLLSSS HLRAKSIWYN SFPPSSAASN APPPPPTGLC 60 NRFVKTGFCP YGDSCKYSHL SSNTATPQNY NSAQDLSVPG LVAAAGSLSS SFQSGPSSVH 120 GTVLASISAT TVMPNSMGGW WGNLPPSLMP PPEGGYRSDL PYLDWG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001520

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021619842.1	3e-48	zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBL	A0A2C9VFA4	6e-47	A0A2C9VFA4_MANES; Uncharacterized protein
STRING	Lus10001520	1e-118	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	3e-40	C3H family protein

Link Out ? help Back to Top
Phytozome	Lus10001520