PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001601
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 215aa    MW: 23176.8 Da    PI: 6.7931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001601genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-185099255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Lus10001601 50 LYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 99
                 69****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-134999IPR001471AP2/ERF domain
CDDcd000185.10E-3149108No hitNo description
SMARTSM003805.3E-3650113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3150108IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2150108IPR016177DNA-binding domain
PROSITE profilePS5103223.31450107IPR001471AP2/ERF domain
PRINTSPR003672.1E-105162IPR001471AP2/ERF domain
PRINTSPR003672.1E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTQLARNSEQ ESSCNSFSSS PPPSPSTITN SNNNNKKIKR IRDDANKHPL YRGVRMRSWG  60
KWVSEIREPR KKSRIWLGTF PTPEMAARAH DVAALSIKGD SAILNFPDIA TPTPPPSPPP  120
PPPPPRNLQA AATKAAQMDQ FDAKQLENRT AAAATTTTTT TRTSSTSSSS SSSLSSMVSS  180
MELTEAEEEG LCEIIELPSL DHFGELESEL VSPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-20481071272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001601
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663353.11e-58dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-47DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLB9RRY32e-55B9RRY3_RICCO; Transcriptional factor TINY, putative
STRINGLus100016011e-153(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]