PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001806
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 502aa    MW: 55151.5 Da    PI: 7.071
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001806genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-061553537
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  C+ ++++ + l+C+ ++  lC  C ++ H+       H
  Lus10001806 15 PCDFCSDQLAVLYCRADSAKLCLFCDQHVHSAnllsrkH 53
                 6***************************99555565556 PP
2zf-B_box22.13e-0756100341
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                   ++C++++++ ++  C +++  lC++C + +H +      H++++
  Lus10001806  56 SQICDNCSSEAVSVRCATDNLVLCHECDSDSHGScavassHDRTS 100
                  689*****************************5488888888766 PP
3CCT63.28.2e-22453496144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RY eK+ktR+++K+irYesRKa+Ae+R RvKGrFvk++
  Lus10001806 453 RGNAMQRYMEKKKTRRYDKHIRYESRKARAETRTRVKGRFVKAT 496
                  7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-131158IPR000315B-box-type zinc finger
PROSITE profilePS501199.3431158IPR000315B-box-type zinc finger
CDDcd000211.86E-61458No hitNo description
PROSITE profilePS501199.89754101IPR000315B-box-type zinc finger
CDDcd000211.85E-45887No hitNo description
SMARTSM00336259101IPR000315B-box-type zinc finger
PROSITE profilePS5101714.465453495IPR010402CCT domain
PfamPF062035.9E-16453495IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MANPIPEGGG GAVVPCDFCS DQLAVLYCRA DSAKLCLFCD QHVHSANLLS RKHVRSQICD  60
NCSSEAVSVR CATDNLVLCH ECDSDSHGSC AVASSHDRTS LEGFSGCPSA LELASIWGFD  120
LTNKEKSVVD DRYCTIPIHD WIGGDNGSDW MTLIERWMGV SQDGSVLPDF TVPIGNGPMF  180
GGKGQTASFK KQGSPPPSCG RYKQVIYEQL VELRKRDLIH GRETPARRTP SRSGWEGADL  240
ASGNDEVCAD NHHRQCLLQE EHKAPFSAML NLPAPAAPEP RPIIIDHFPG QNTEWNSNSK  300
INKNNTNPTS NSTTQIWDFN LGQSRNEDDK SGLEVGYGAV NHAGFTMKDI SDLFKESALD  360
GTRLLGEMYH LNSSSFEHHD DMVSFSTTSI SQSGGAISES NTLKMQNTSK VGRKRTPGRC  420
KDTKFGEFSV GTARTEASAV GNKLDTEMLA QNRGNAMQRY MEKKKTRRYD KHIRYESRKA  480
RAETRTRVKG RFVKATEAPE S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673056.11e-149zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLA0A2C9VBX21e-145A0A2C9VBX2_MANES; Uncharacterized protein
STRINGLus100018060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-94B-box type zinc finger protein with CCT domain