PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001879
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 162aa    MW: 18646.2 Da    PI: 10.4885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001879genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.66.7e-1548862259
                 EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                 r+YYrC +  +C+++k+ver++ dpk++++tY++eHnh+
  Lus10001879 48 RGYYRCNFCkTCMARKQVERNKFDPKMFIVTYTEEHNHH 86
                 99*****9889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-152786IPR003657WRKY domain
SMARTSM007743.6E-74387IPR003657WRKY domain
SuperFamilySSF1182902.22E-114786IPR003657WRKY domain
PfamPF031061.6E-114886IPR003657WRKY domain
PROSITE profilePS5081116.6394885IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MYGEEASREE QIRPRNVRRH LHGGPQPPPP QPPQLKLNFV SLYCGGFRGY YRCNFCKTCM  60
ARKQVERNKF DPKMFIVTYT EEHNHHPLWP PQLKFNCFSL YGGGFRGYSR CSSKNMFGEE  120
ASRGTNSTRK CSSSPKRRTT TTTPWPPQLA QPPRRGHHSL S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100018791e-117(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-16WRKY family protein