PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002049
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family FAR1
Protein Properties Length: 198aa    MW: 22776.5 Da    PI: 6.7268
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002049genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.64e-0843127789
         FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                  A  +GF+++  ++kk+ r++  ++  ++Cs  g+ ++++++++++++t++++  +C+ ++ v+ +      kw++++++ +  He+
  Lus10002049  43 ALALGFQLTHVSHKKNPREE-EKRLYLYCSHGGRGKSQSTTSSESSHTTTTSYSDCTFMVCVRPRCvdaGWKWRIDTFKDDLKHEI 127
                  7789*******999995555.6888999************999999****************9887656779*******8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-543127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSHKGSSSDD DDVEEQLNYC GYFVSGLFYN IIDDACDAAK DIALALGFQL THVSHKKNPR  60
EEEKRLYLYC SHGGRGKSQS TTSSESSHTT TTSYSDCTFM VCVRPRCVDA GWKWRIDTFK  120
DDLKHEILRS FHSHQFELCR EGTQQRNQLT YEMKDHIRQL EENHVPPRQM RRGLVIVQET  180
PTSLMGYIRV HEPPQPC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100020491e-148(Linum usitatissimum)