PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002058

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ZF-HD

Protein Properties

Length: 113aa MW: 12252.3 Da PI: 11.9475

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002058	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	37.4	6e-12	28	61	3	37
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegt 37 ++rY eC+kNhAa++Gg+av G +E ++ g++++ Lus10002058 28 SFRYGECQKNHAANIGGYAVHGLREVTAR-GADNK 61 689**********************9998.54433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-7	2	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-8	29	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	10.548	31	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MMKKRQVVIK RSEATGRIST TSSPVMGSFR YGECQKNHAA NIGGYAVHGL REVTARGADN 60 KKTAGRPPPS RAPRADATGT STVGRWKRMK WFVSTLLLIT TPLVLVARVK ID*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269\|PubMed:21455630}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002058

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080548.1	9e-21	mini zinc finger protein 3
Swissprot	Q2Q493	8e-13	MIF3_ARATH; Mini zinc finger protein 3
TrEMBL	B9RLZ3	3e-19	B9RLZ3_RICCO; Transcription factor, putative
STRING	Lus10002058	3e-77	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	1e-14	mini zinc finger

Link Out ? help Back to Top
Phytozome	Lus10002058