PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002213
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 176aa    MW: 19628.3 Da    PI: 8.1877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002213genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-104989954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  Lus10002213 49 ARERRHRISDRFKILQSLVPGG-----SKMDTVTMLEQAINYVKFL 89
                 699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3074089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1445104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-124695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-124693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-134693No hitNo description
PfamPF000108.7E-84989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDYFTTMAST ASSSSTKQKK TKQPKNPNPN PNRPSRSVRL STDPQSVAAR ERRHRISDRF  60
KILQSLVPGG SKMDTVTMLE QAINYVKFLK TQIVIHETLM NQPQLPPNNN YSEDETTSFM  120
FTDQVAMLPD LSNYNSIPGE GSGLLYEVPG GGCSSQMMMY PLPECFLDDG GMRYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002213
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092808.11e-37transcription factor bHLH140
TrEMBLW9R2D33e-36W9R2D3_9ROSA; Uncharacterized protein
STRINGLus100022131e-128(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.15e-28APRATAXIN-like