PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002384
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 416aa    MW: 47508.1 Da    PI: 6.6157
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002384genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.4e-17134180148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed llv+ v q+G++ W+ Ia++++ gR +kqc++rw+++l
      Lus10002384 134 KGQWTIDEDRLLVQFVGQYGTKKWSYIAQMLP-GRIGKQCRERWHNHL 180
                      799*****************************.*************97 PP
2Myb_DNA-binding48.32.3e-15186228145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ WT++Ed+ l++ + + G++ W+ Ia++++ gRt++++k++w+
      Lus10002384 186 KDTWTEDEDKVLIHSHIEIGNK-WAEIAKRLP-GRTENSIKNHWN 228
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.046129184IPR017930Myb domain
SuperFamilySSF466893.01E-30131227IPR009057Homeodomain-like
SMARTSM007171.8E-13133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-26135188IPR009057Homeodomain-like
PfamPF139214.9E-16137195No hitNo description
CDDcd001671.51E-12137180No hitNo description
SMARTSM007171.6E-14185233IPR001005SANT/Myb domain
PROSITE profilePS5129419.028185235IPR017930Myb domain
CDDcd001678.73E-11188231No hitNo description
Gene3DG3DSA:1.10.10.603.2E-20189233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEHETDTFVS SQALFMPQNN YNMTTLSHHH HRHPPPNFQE PPSQLQSTVF PQEEDHLFGQ  60
NIGSSSNQVF GVNTWSNLDS YDVYSYGSSS SNNYESECKP FANINGEKFN NQMVNMVAAP  120
VDKKTWKGKK NVVKGQWTID EDRLLVQFVG QYGTKKWSYI AQMLPGRIGK QCRERWHNHL  180
KPDIKKDTWT EDEDKVLIHS HIEIGNKWAE IAKRLPGRTE NSIKNHWNAT KRKQYSKRKC  240
RSTKYPRTSI LQDYIKSLNL VNSTSNKRSS SSKNNTTNAA TATSSAIIPA APLPLARRPE  300
HNNSESLLHP QLSMDHLYEE NDRLVPDFDF MSNEEVPDFG VDDEMFQDGC SIESLLDGLS  360
SCEPLVDEKS FNKSVEDAML SMPFEVKKEM DLVEIDEFTG KGPLNHSPNI YMLKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-421322342104C-Myb DNA-Binding Domain
1msf_C4e-421322342104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002384
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650673.11e-106transcription factor MYB98-like
SwissprotQ9S7L29e-78MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2C9UKE51e-103A0A2C9UKE5_MANES; Uncharacterized protein
STRINGLus100023840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-74myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]