PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002390
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 295aa    MW: 32241.6 Da    PI: 9.2766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002390genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-1134125255
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........................................TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkas......................................kapskKlsKaeiLekAveYIksLq 55 
                  + ah   Er RR+++++ f++L  llP+++                                      +   ++ +K++i+ +Av++IksLq
  Lus10002390  34 KGAHIFTERERRKKMRNMFSTLHGLLPQLPpkvqetgrckaglrscsgfsvaekvmsgggsfispqcsSRLIRRADKSTIVDEAVKHIKSLQ 125
                  5789999*********************555************************************9888899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-831129No hitNo description
PROSITE profilePS5088812.60832124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.47E-133364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-834125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-133462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-738130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13104137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.47E-13106141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENNNGVTVG MKRERGEENT QKNTTGGRRG ESEKGAHIFT ERERRKKMRN MFSTLHGLLP  60
QLPPKVQETG RCKAGLRSCS GFSVAEKVMS GGGSFISPQC SSRLIRRADK STIVDEAVKH  120
IKSLQQTLHD LQQRKLQILQ SPASQKVPSV SFNDTVIIND DAAINDGYNA VINDGKVPSL  180
LPLGFQTWTS ANVILNIYGD EAQISICRPS SGNKIGGQGV FTAVCSVLEK YNIDVVTAHV  240
ASMSHRRTFM IQVRHRRPQE KVGAVEGGFA EATEVEGIYK DATNEIISYL SCCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100023900.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-36bHLH family protein