PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002425
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 179aa    MW: 20226 Da    PI: 9.1669
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002425genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.8e-1220111598
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  l  ++ l ++ l lp kf+++hg++   s   +l  ++g   +v +           r    ++l++GW eF +   +  g fvvFk+ g+s f   v
  Lus10002425  20 L--PYKLHQKKLKLPLKFVRRHGSE--ISASAKLSLPNGHACNVGVEKrrenG----RkdeeIWLSNGWGEFLEHLSISKGCFVVFKYRGHSAF--DV 107
                  3..67778888***********966..77789999999999999997744433....34567**************************998999..88 PP

                  EEE- CS
           B3  95 kvfr 98 
                   +f+
  Lus10002425 108 EIFD 111
                  8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-187112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-169115IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-1314111No hitNo description
PROSITE profilePS508638.83914113IPR003340B3 DNA binding domain
SMARTSM010191.1E-415113IPR003340B3 DNA binding domain
PfamPF023622.9E-919110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MASSSSSITK PHTSFFRVVL PYKLHQKKLK LPLKFVRRHG SEISASAKLS LPNGHACNVG  60
VEKRRENGRK DEEIWLSNGW GEFLEHLSIS KGCFVVFKYR GHSAFDVEIF DLATCSISYP  120
DPPPHHDHQQ SGSPENVSSP EIIAISDDED EKYEKLVESL KASGIVTSRW FKRRIRMM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002425
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100024251e-130(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein