PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002426
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 111aa    MW: 11957.8 Da    PI: 9.1005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002426genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-125921793
                 E--HHH.HTT...---..--SEEEEEETTS......-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3 17 vlpkkfaeeh...ggkkeesktltledesg......rsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                 v+p +fa++h   +g+      ++l+   g      ++W++ +  ++k ++     + ++kGW++F ++n+L +gD++++++++  +++l+
  Lus10002426  5 VMPVSFARRHilkSGN--HCANVVLKAAGGvssssgKQWSLAVEKDRKVKAgpsygVSFGKGWQQFKEDNNLGDGDVCLLQFES-CNGRLC 92
                 78999*****986333..334677777766777777*******775555557788899***********************865.666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.237199IPR003340B3 DNA binding domain
PfamPF023621.2E-9593IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-11586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-10593IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-13594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MILQVMPVSF ARRHILKSGN HCANVVLKAA GGVSSSSGKQ WSLAVEKDRK VKAGPSYGVS  60
FGKGWQQFKE DNNLGDGDVC LLQFESCNGR LCISCPVNSS IYHSKLAYCF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100024262e-76(Linum usitatissimum)