PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002483

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 259aa MW: 29361.4 Da PI: 9.3247

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002483	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.6	8.9e-31	12	66	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF eav+qLGG+++AtPk il++m+++ Lt++hvkSHLQkYR+ Lus10002483 12 KERLRWTQELHDRFEEAVNQLGGPDRATPKGILKAMGIPRLTIYHVKSHLQKYRI 66 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.586	9	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-29	10	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-17	10	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	12	67	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-10	14	65	IPR001005	SANT/Myb domain
Pfam	PF14379	8.1E-17	97	141	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGSSRSDGAT NKERLRWTQE LHDRFEEAVN QLGGPDRATP KGILKAMGIP RLTIYHVKSH 60 LQKYRISKFI PETPNRGMER RNISEMLPNF SATSGAQLNE ALQMQLEVER RLSDHLDVQR 120 NLKLKIEAQG RFLERMVEEH KNRAAAFSKT KLFPTMSMPS LCDESESNND KGDESDSEGE 180 RVEVQSGEVF RALKRLRTDN DVVLPPRYKI VGPAAEPLVK NMMYVQKDAK FSYPTQGINF 240 AWNNMASSCP SPLVPSYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-21	12	69	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002483

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308222.2	1e-120	myb family transcription factor PHL7
Swissprot	Q9SJW0	3e-50	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	B9HCX3	1e-118	B9HCX3_POPTR; Uncharacterized protein
STRING	Lus10002483	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-52	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10002483