PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10002513

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 260aa MW: 29586.5 Da PI: 6.9579

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10002513	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.3	4.4e-37	45	144	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCa+Ck++rrkC +dC+lapyfp++ +++f n+hklFG+++++k++++l + ++++am+s+++++++ra+dPv G+++++l+lq+q++ ++a+l+ll Lus10002513 45 ACASCKYQRRKCDPDCILAPYFPHDCQRQFLNAHKLFGVRKITKIIENLvTQAHKDEAMRSIIFQSDVRANDPVGGCYRIVLELQRQINYAQADLDLL 142 7*********************************************9455559*************************************9987 PP DUF260 98 ke 99 + Lus10002513 143 LH 144 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.81	44	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-35	45	141	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MSNNTSPISI TTTTSSNTNT NTNTNSSNKN NNNISRTANG GTTPACASCK YQRRKCDPDC 60 ILAPYFPHDC QRQFLNAHKL FGVRKITKII ENLVTQAHKD EAMRSIIFQS DVRANDPVGG 120 CYRIVLELQR QINYAQADLD LLLHHLAIYQ QQQQQKHHQN HHQQQDQTTI DTNIDSAMMA 180 AVGCMDVYTD PMLLQFHYSP QQQPQQQPDH EEQQQQHHHH HHHHHHQNQQ QHHQLHGYAV 240 EDTLQDSDSV NSWGMAAGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-23	37	140	4	105	LOB family transfactor Ramosa2.1
5ly0_B	5e-23	37	140	4	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10002513

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021650001.1	2e-67	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	1e-47	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2C9UXW9	1e-63	A0A2C9UXW9_MANES; Uncharacterized protein
STRING	Lus10002513	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-40	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Lus10002513

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]