PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002538
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 95aa    MW: 10477.7 Da    PI: 9.8773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002538genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-091457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W  +ar +g g++++++k ++
      Lus10002538 14 SWTPKQNKLFERALAVYDKDapdRWQNVARAVG-GKSAEEVKRHY 57
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-71163IPR001005SANT/Myb domain
SuperFamilySSF466893.04E-121369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-41360IPR009057Homeodomain-like
PROSITE profilePS500906.4811361IPR017877Myb-like domain
CDDcd001673.65E-81461No hitNo description
PfamPF002493.9E-71457IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MGSRYLPSHG SGSSWTPKQN KLFERALAVY DKDAPDRWQN VARAVGGKSA EEVKRHYDRL  60
VADLMFIESG QAPLPNYNNP VNSGGGRVFA EQQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30894486RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002538
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028852.11e-40PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1731e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H3XE856e-38A0A2H3XE85_PHODC; protein RADIALIS-like 3 isoform X1
STRINGLus100025381e-64(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-35RAD-like 6