PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002581
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 251aa    MW: 28193.8 Da    PI: 9.4768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002581genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.9e-51141381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+++ ky++g+r+nrat sgyWkatg dk+++++ ++
  Lus10002581  14 LPPGFRFHPTDEELVVQYLKRKVYSFPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTKEAKYPNGNRSNRATGSGYWKATGIDKQIVAAsSK 107
                  79****************************.89***************54...46799**********************************998567 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kktLvfy+g+ p+g +tdWvmheyr+
  Lus10002581 108 TVVGMKKTLVFYRGKPPHGGRTDWVMHEYRF 138
                  77***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-615161IPR003441NAC domain
PROSITE profilePS5100558.01814161IPR003441NAC domain
PfamPF023654.0E-2715137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEKMSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVYSFP LPASIIPEVD VCKSDPWDLP  60
GDLEQERYFF STKEAKYPNG NRSNRATGSG YWKATGIDKQ IVAASSKTVV GMKKTLVFYR  120
GKPPHGGRTD WVMHEYRFLP SPSDAPNQQM ENWVLCRIFL KKRGSKNEDD AGCCIKQQLG  180
SSNQTVTRHV KPALTRKPVF YDFMTKGGTE VSSSGSSGIT DDVSNNETDE HEENSSSGNT  240
SSFPHFRRKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-511216615170NO APICAL MERISTEM PROTEIN
1ut4_B1e-511216615170NO APICAL MERISTEM PROTEIN
1ut7_A1e-511216615170NO APICAL MERISTEM PROTEIN
1ut7_B1e-511216615170NO APICAL MERISTEM PROTEIN
3swm_A2e-511216618173NAC domain-containing protein 19
3swm_B2e-511216618173NAC domain-containing protein 19
3swm_C2e-511216618173NAC domain-containing protein 19
3swm_D2e-511216618173NAC domain-containing protein 19
3swp_A2e-511216618173NAC domain-containing protein 19
3swp_B2e-511216618173NAC domain-containing protein 19
3swp_C2e-511216618173NAC domain-containing protein 19
3swp_D2e-511216618173NAC domain-containing protein 19
4dul_A1e-511216615170NAC domain-containing protein 19
4dul_B1e-511216615170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002581
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881782.11e-120NAC domain-containing protein 83-like
RefseqXP_015902286.11e-120NAC domain-containing protein 83-like
SwissprotQ9FY931e-91NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A1Q3BTN71e-118A0A1Q3BTN7_CEPFO; NAM domain-containing protein
STRINGLus100025810.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]