PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002720
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 300aa    MW: 32028 Da    PI: 6.1691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002720genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.7e-10148192554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR++i +++  L+el+P+ +      K + a++L + v+Y+k L
  Lus10002720 148 HSIAERLRREKIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 192
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.16E-11141197No hitNo description
SuperFamilySSF474593.27E-15141202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.132143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7148192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGNPSDTPS DDFLQEILGL QSFASADPSL DASAQPPMFL QLSSGDPSAA GITSLTGSAA  60
AGDTSGFHGF PLGLSLDHQG NNNGGFMKHE DASGSGKRFR DDVLDGRVSI SKNIFHRQQM  120
PTSVPAAPHP PAMRPRVRAR RGQATDPHSI AERLRREKIA ERIRALQELV PSVNKTDRAA  180
MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDIPLS SVEDENGEGG RNQPAWEKWS  240
NDGTEKQVAK LMEENVGAAM QFLQSKALCI MPISLASAIY HTQSQDPPSI VKPEANPPS*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898025.11e-158transcription factor UNE12 isoform X2
SwissprotO227681e-121UNE12_ARATH; Transcription factor UNE12
TrEMBLB9S4R91e-154B9S4R9_RICCO; DNA binding protein, putative
STRINGLus100027200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]