PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002794
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 261aa    MW: 28958.7 Da    PI: 10.0886
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002794genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.32e-3256150298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  lfqr+w e+Dei+lL Gl++f +k+g++p+++i ++y+fvkks+++++s sql eK  rLKkKf+kk++  k+g+++sf+k+hdqk+f+lskkiWgs
  Lus10002794  56 LFQRIWGEDDEIALLNGLLEF-SKRGVDPFKEIADVYDFVKKSLNIDISVSQLKEKAARLKKKFTKKSNG-KDGEDKSFAKQHDQKCFDLSKKIWGS 150
                  79*******************.99******************************************9998.9***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-2857149IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEAKSSSKAT TSNATASKAR KRATETETEV KDTKRRKESS SSAAAEKTED SAKKQLFQRI  60
WGEDDEIALL NGLLEFSKRG VDPFKEIADV YDFVKKSLNI DISVSQLKEK AARLKKKFTK  120
KSNGKDGEDK SFAKQHDQKC FDLSKKIWGS EASSRAVQAS NNATPKPNKK EKGNSSNGIT  180
PKRHAGVEDG AADRKKDMLP GEDIRDVVIK KGLDMVEGSK RGEFEERWKD VNVATLKLFV  240
QREQLVVDQA KLMLAAMDED *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936RKRATETETEVKDTKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8878199e-40HQ887819.1 Linum usitatissimum clone GMU2AYZ01AZVCG microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690494.17e-65GLABROUS1 enhancer-binding protein-like
RefseqXP_021690495.17e-65GLABROUS1 enhancer-binding protein-like
RefseqXP_021690496.17e-65GLABROUS1 enhancer-binding protein-like
STRINGLus100027940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-16DNA-binding storekeeper protein-related transcriptional regulator