PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002801
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 234aa    MW: 25462.3 Da    PI: 4.8268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002801genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1851100255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Lus10002801  51 LYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 100
                  69****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.64E-3150109No hitNo description
PfamPF008479.8E-1350100IPR001471AP2/ERF domain
PROSITE profilePS5103223.31451108IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2151109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3151109IPR001471AP2/ERF domain
SMARTSM003807.1E-3551114IPR001471AP2/ERF domain
PRINTSPR003672.3E-105263IPR001471AP2/ERF domain
PRINTSPR003672.3E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTQLPRNSEQ ESSCNSFSSS PPPSPSSTIT NSNNNNKKIK RIRDAANKHP LYRGVRMRSW  60
GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG DSAILNFPDI ATLLPRPASL  120
SPRDVQAAAT KAAQMDQFDA KQLENSAAAT TTTTTSSSSS SSLSSMVSSM ELTEAEEEGL  180
CEIIELPSLD HFGELESEFV LADSVEGWLY PPPWLTTEDD SYSGGGGGLF WNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1943108672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663353.14e-84dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD35e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLB9RRY34e-77B9RRY3_RICCO; Transcriptional factor TINY, putative
STRINGLus100028011e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]