PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002855
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 320aa    MW: 35536.3 Da    PI: 4.2916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002855genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-1962120155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p+   g   k+  r +lg+f+ta eAa a+++a+++++g
  Lus10002855  62 CSYRGVRQRT-WGKWVAEIREPVLiTGstkKKgSRLWLGTFDTAVEAAMAYDNAARSMYG 120
                  67*****999.**********888877796447************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1362120IPR001471AP2/ERF domain
CDDcd000187.49E-3062129No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2963129IPR001471AP2/ERF domain
SMARTSM003804.5E-3763134IPR001471AP2/ERF domain
PROSITE profilePS5103222.66963128IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2063129IPR016177DNA-binding domain
PRINTSPR003672.3E-106475IPR001471AP2/ERF domain
PRINTSPR003672.3E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEDFSSIQKR TQRRRSCGGE ESVEETLERW KKQTKLLKKK NPPKGSKKGC MRGKGGPENL  60
TCSYRGVRQR TWGKWVAEIR EPVLITGSTK KKGSRLWLGT FDTAVEAAMA YDNAARSMYG  120
GSAVLNFPNG VVNDDNQSSS PATETETEIS SASLDAGVVT TEELIKREVA EEELEVQNTK  180
MMNSTEGENL QDEGLDVELE EFMKYCSSWA LILNTEEEEE EEKMVKLEDV NGNEQTNSGG  240
TTTTTTTTDA AYHTDFGRET SLNPDVYPCG GSKAFEEPFR IDTGVEWSGA EVIDWSMVEE  300
EPGVPSDMML FHDPEFGCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1964128360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-18641291573Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038KKQTKLLKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002855
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327719.13e-47dehydration-responsive element-binding protein 2A
TrEMBLA0A2P2JHD26e-47A0A2P2JHD2_RHIMU; Dehydration responsive element binding protein 2E
TrEMBLA0A2P2JHD49e-47A0A2P2JHD4_RHIMU; Uncharacterized protein
STRINGLus100028550.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-36ERF family protein